Resume / CV - Sophia Antipolis - Méditerranée

Transcription

Grégoire MALANDAIN
Senior research scientist at INRIA
Deputy scientific director of INRIA in charge of the ”Computational Sciences for
Biology, Medicine and the Environment” domain
INRIA Sophia Antipolis
2004 Route des Lucioles BP 93,
06902 Sophia Antipolis Cedex
France
Phone: +33 4 92 38 79 26
Fax: +33 4 92 38 76 69
Email: [email protected]
http://www.inria.fr/sophia/asclepios/
Education
2006
1992
1989
Habilitation à Diriger des Recherches (HDR), Nice Sophia Antipolis university
Phd Thesis from the École Centrale de Paris, France
graduate engineer from the École Centrale de Paris, applied mathematics.
Professional experience
Nov. 2009 -
Sep. 2001 2005 1998 - 2005
1993
deputy scientific director of INRIA in charge of the ”Computational Sciences for Biology, Medicine and the Environment domain”
senior research scientist, INRIA
team coordinator of Asclepios research team (headed by N. Ayache)
team coordinator of Epidaure research team (headed by N. Ayache)
Permanent position, research scientist, INRIA, Sophia-Antipolis.
Short bio
Grégoire Malandain received an engineer degree from the Ecole Centrale des Arts
et Manufactures in 1989, a PhD degree in medical image analysis in 1992, and a
habilitation degree in 2006. He entered INRIA at Sophia-Antipolis in 1993, and
became senior research scientist in 2001. From 1998, he was team coordinator of
Epidaure team and then from Asclepios team from 2005. Since 2009, he is deputy
scientific director of INRIA in charge of the ”Computational Sciences for Biology,
Medicine and the Environment domain”.
Grégoire Malandain began research in medical image analysis in 1989 at INRIA
Rocquencourt. His methodological research interests include discrete topology, image segmentation, image registration, and atlas building. Driving applications include multiple sclerosis biomarkers, radiotherapy planification, and pre-clinical and
biological image analysis.
Professional activites
Awards
• Giovanni DiChiro Award for Outstanding Scientific Research published in the
Journal of Computer Assisted Tomography, 21(4):554-566, 1997.
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• Excellence prize for transfert from research towards industry from european
network ECVnet for the software VoxelMatch (1996).
Awards of advised PhD students:
• Liliane Ramus: 3rd prize of the ”Head & Neck Autosegmentation Challenge”,
MICCAI satellite workshop ”Medical Image Analysis for the Clinic - A Grand
Challenge” (2010).
• Jean-Christophe Souplet: 1st prize fo ”Multiple Sclerosis Lesion Segmentation
Challenge”, MICCAI satellite workshop ”3D Segmentation in the Clinic: A
Grand Challenge II” (2008).
• Tom Vercauteren: Best Paper at MICCAI’06 (October 4, 2006, Copenhague)
for ”Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for in vivo Fibered Microscopy”.
Editorial activities
• Editorial board of International Journal of Computer Vision
• Program committee: MICCAI’2007, MICCAI’2008, MICCAI’2009, DGCI’2005,
MIAMS’2008, ...
• Review activity for journals: IEEE PAMI, IEEE TBE, IEEE TMI, IEEE
TIP, IJCV, IVC, JMIV, JCAT, Medical Image Analysis, Medical Physics,
NeuroImage, PRL, CVIU, GMIP, ...
• Review activity for conferences: MICCAI, IPMI, ECCV, CVPR, ISBI, DGCI,
CARI, TAIMA, ...
Contractual activities
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European project CARE4ME
European project MAESTRO
European project MAPAWAMO
European project NEURO
French project MINIARA
French project CPER TELIUS
French project CPER TECHAIR
Technology transfer activities
• co-author of 5 patents
• co-founder of the stratup compagny Quantificare
• Medtronic: adaptation of grey nuclei atlas for deep brain stimuation planning
(integration in the StealthStation)
• Dosisoft: multimodal image registration and atlas based segmentation for
radiotherapy planning (integration in the IMAGO product)
• TGS/Mercury: segmentation of tubular structures (integration in Amira (now
Avizo).
• Elf-Atochem/Atofina and Noesis: segmentation of 3D images of polymer
sponges and of carbon fibers; the integration of the software into an industrial
product was done by Noesis for Atofina.
Scientific responsabilities
• Workshops coordinator (MICCAI 2004)
• Scientific organization (CVRMed 1995)
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Teaching
2009
1998
1997
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2011
2009
2008
2009
Specialized courses for radiation oncologists (4h)
Master GBM, medical image analysis (24 h)
Master ARAVIS/SIC/IV/IGMMV, medical image analysis (15 h)
ECP/Master MVA, medical image analysis (12 h)
Thesis committee
Since 1997, member of 58 PhD thesis committee, 24 as reviewer (3 outside of France:
Uk, Sweden, Australia), and 7 as chairman. Member of 4 HDR committee as
reviewer. Member of 3 medical thesis committee.
PhD advising
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Marine Breuilly (expected Winter 2013), 40 %
Liliane Ramus (2011), 100 %
Romain Fernandez (2010), 40 %
Jean-Christophe Souplet (2009), 80 %
Arnaud Charnoz (2007), 40 %
Olivier Commowick (2007), 100 %
Guillaume Dugas-Phocion (2006), 80 %
Céline Fouard (2005), 100 %
Mauricio A. Reyes (2005), 80 %
Christophe Blondel (2004), 80 %
Pierre-Yves Bondiau, MD, (2004), 100 %
Jonathan Stoeckel (2003), 60 %
Sébastien Ourselin (2002), 40 %
David Rey (2002), 40 %
Octave Migneco, MD, (2001), 100 %
Alexis Roche (2000), 50 %
Karl Krissian (1999), 50 %
Luc Soler (1998), 40 %
Sara Fernández-Vidal (1996), 80 %
MS student advising
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François Hébert,
Romain Vauchelles,
Olivier Duhamel,
Olivier Commowick,
Gérald Bianchi,
Guillaume Flandin,
Nicolas Lambert,
Alejandro Ribes,
Sylvie Jourdan,
Karl Krissian,
Sara Fernández-Vidal
The following students are also MD:
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Muriel Laffon (neurology),
Karen Benezery (radiation oncology),
Yves Chau (radiology),
Aline Myx (surgery),
Pierre-Yves Bondiau (radiation oncology)
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Publications
Thesis
[TH-1]
G. Malandain, Filtrage, topologie et mise en correspondance d’images médicales
multidimensionnelles, Thèse de sciences, Ecole Centrale de Paris, Septembre
1992.
[TH-2]
G. Malandain,
Les mesures de similarité pour le recalage des images médicales,
Habilitation à diriger des recherches, Université Nice
Sophia-Antipolis, March 2006,
Publications/Gregoire.Malandain/malandain-hdr-2006.pdf.
Book chapters
[LI-1]
N. Ayache, O. Clatz, H. Delingette, G. Malandain, X. Pennec, M. Sermesant,
“Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of
Biomedical Images”, in : From semantics to computer science: essays in honor of
Gilles Kahn, Y. Bertot, G. Huet, J.-J. Lévy, and G. Plotkin (editors), Cambridge
University Press, 2009, p. 415–436, http://www.inria.fr/sophia/asclepios/
Publications/Nicholas.Ayache/Colloquium-Gilles-Kahn-NA-2007-v5.pdf.
[LI-2]
G. Malandain, “Applications de la géométrie discrète en imagerie médicale”, in :
Géométrie discrète et images numériques, Traités IC2, Hermès, 2007, p. 371–379.
[LI-3]
T. Vercauteren, N. Ayache, N. Savoire, G. Malandain, A. Perchant, “Processing of In Vivo Fibered Confocal Microscopy Video Sequences”,
in :
Microscopic Image Analysis for Life Science Applications, J. Rittscher,
R. Machiraju, and S. T. C. Wong (editors), Artech House, 2008, ch. 19,
p. 441–463,
http://www.inria.fr/sophia/asclepios/Publications/Tom.
Vercauteren/ProcessingInVivoFCM-Vercauteren-Chap19MIALSA08.pdf.
International Journal Articles (peer-reviewed)
[RI-1]
E. Bardinet, M. Bhattacharjee, D. Dormont, B. Pidoux, G. Malandain, M. Schupbach, N. Ayache, P. Cornu, Y. Agid, J. Yelnik, “A three-dimensional histological
atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.”, Journal of Neurosurgery
110, 2, February 2009, p. 208–19, http://www.inria.fr/sophia/asclepios/
Publications/Bardinet/bardinet-jn-2008.pdf.
[RI-2]
G. Bertrand, G. Malandain, “A new characterization of three-dimensional simple
points”, Pattern Recognition Letters 15, 2, February 1994, p. 169–175.
[RI-3]
G. Bertrand, G. Malandain, “A note on “Building skeleton models via 3D medial
surface-axis thinning algorithms””, Graphical Models and Image Processing 57,
6, November 1995, p. 537–538.
[RI-4]
C. Blondel, G. Malandain, R. Vaillant, N. Ayache,
“Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence”,
IEEE Transactions on Medical Imaging 25, 5, May
2006, p. 653–663, http://www.inria.fr/sophia/asclepios/Publications/
Gregoire.Malandain/blondel-tmi-2006.pdf.
[RI-5]
C. Blondel, R. Vaillant, G. Malandain, N. Ayache, “3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field”, Physics in
Medicine and Biology 49, 11, 2004, p. 2197–2208, http://www.inria.fr/sophia/
asclepios/Publications/Gregoire.Malandain/blondel-pmb-2004.pdf.
[RI-6]
J.-D. Boissonnat, R. Chaine, P. Frey, G. Malandain, S. Salmon, E. Saltel,
M. Thiriet,
“From arteriographies to computational flow in saccular
aneurisms: the INRIA experience”,
Medical Image Analysis 9, 2, April
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Gregoire.Malandain/boissonnat-media-2005.pdf.
[RI-7]
P.-Y. Bondiau, G. Malandain, S. Chanalet, P.-Y. Marcy, J.-L. Habrand, F. Fauchon, P. Paquis, A. Courdi, O. Commowick, I. Rutten, N. Ayache, “Atlasbased automatic segmentation of MR images: validation study on the brainstem
in radiotherapy context”, Int J Radiat Oncol Biol Phys 61, 1, January 2005,
p. 289–98, http://www.inria.fr/sophia/asclepios/Publications/Gregoire.
Malandain/bondiau-ijrobp-2005.pdf.
[RI-8]
P.-Y. Bondiau, G. Malandain, P. Chauvel, F. Peyrade, A. Courdi, N. Iborra, J.-P.
Caujolle, P. Gastaud, “Automatic three-dimensional model for protontherapy of
the eye: Preliminary results”, Medical Physics 30, 6, June 2003, p. 1013–1020.
[RI-9]
P. Chauvel, W. Sauerwein, N. Bornfeld, W. Friedrichs, N. Brassart, A. Courdi,
J. Herault, J. P. Pignol, P. Y. Bondiau, G. Malandain, “Clinical and technical requirements for proton treatment planning of ocular diseases. The SERAG (South
Europe Radiotherapy Group)”, Front Radiat Ther Oncol 30, 1997, p. 133–42.
[RI-10] O. Clatz, M. Sermesant, P.-Y. Bondiau, H. Delingette, S. K. Warfield, G. Malandain, N. Ayache, “Realistic Simulation of the 3D Growth of Brain Tumors in
MR Images Coupling Diffusion with Mass Effect”, IEEE Transactions on Medical Imaging 24, 10, October 2005, p. 1334–1346, http://www.inria.fr/sophia/
asclepios/Publications/Clatz/TMI_GBM_clatz.pdf.
[RI-11] O. Commowick, V. Arsigny, A. Isambert, J. Costa, F. Dhermain, F. Bidault, P.-Y.
Bondiau, N. Ayache, G. Malandain, “An efficient locally affine framework for the
smooth registration of anatomical structures”, Medical Image Analysis 12, 4, August 2008, p. 427–41, http://www.inria.fr/sophia/asclepios/Publications/
Olivier.Commowick/CommowickMedia2008.pdf.
[RI-12] O. Commowick, V. Grégoire, G. Malandain, “Atlas-Based Delineation of Lymph
Node Levels in Head and Neck Computed Tomography Images”, Radiotherapy
Oncology 87, 2, 2008, p. 281–289, http://www.inria.fr/sophia/asclepios/
Publications/Olivier.Commowick/CommowickRO2008.pdf.
[RI-13] J. Feldmar, J. Declerck, G. Malandain, N. Ayache, “Extension of the ICP
Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes”, Computer Vision and Image Understanding 66, 2, May 1997, p. 193–206, http:
//www.inria.fr/sophia/asclepios/Publications/Misc/CVIU-97-1.pdf.
[RI-14] R. Fernandez, P. Das, V. Mirabet, E. Moscardi, J. Traas, J.-L. Verdeil,
G. Malandain, C. Godin,
“Imaging plant growth in 4-D: robust tissue
reconstruction and lineaging at cell resolution”,
Nature Methods 7, 7,
Gregoire.Malandain/fernandez-nm-2010.pdf.
[RI-15] C. Fouard, G. Malandain, S. Prohaska, M. Westerhoff, “Blockwise Processing
Applied to Brain Microvascular Network Study”, IEEE Transactions on Medical
Imaging 25, 10, 2006, p. 1319–1328, http://www.inria.fr/sophia/asclepios/
Publications/Gregoire.Malandain/fouard-tmi-2006.pdf.
[RI-16] C. Fouard, G. Malandain, “3-D chamfer distances and norms in anisotropic
grids”,
Image and Vision Computing 23, 2, February 2005, p. 143–
158, http://www.inria.fr/sophia/asclepios/Publications/Fouard/Fouard_
Malandain_IVC_2004.pdf.
[RI-17] P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher,
D. L. Collins, A. Evans, G. Malandain, N. Ayache, G. E. Christensen,
H. J. Johnson,
“Retrospective evaluation of intersubject brain registration”,
IEEE Transactions on Medical Imaging 22, 9, September
Gregoire.Malandain/hellier-tmi-2003.pdf.
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[RI-18] A. Isambert, G. Bonniaud, F. Lavielle, G. Malandain, D. Lefkopoulos, “A phantom study of the accuracy of CT, MR and PET image registrations with a
block matching-based algorithm”, Cancer radiothérapie 12, 8, December 2008,
Malandain/isambert-cr-2008.pdf.
[RI-19] A. Isambert, F. Dhermain, F. Bidault, O. Commowick, P.-Y. Bondiau,
G. Malandain, D. Lefkopoulos, “Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context”,
Radiotherapy Oncology 87, 1, April 2008,
Malandain/isambert-ro-2008.pdf.
[RI-20] K. Krissian, G. Malandain, N. Ayache, R. Vaillant, Y. Trousset, “Model-Based
Detection of Tubular Structures in 3D Images”, Computer Vision and Image Understanding 80, 2, 2000, p. 130–171, http://www.inria.fr/sophia/asclepios/
Publications/Gregoire.Malandain/krissian-cviu-2000.pdf.
[RI-21] G. Malandain, E. Bardinet, K. Nelissen, W. Vanduffel,
“Fusion
of autoradiographs with an MR volume using 2-D and 3-D linear transformations”,
NeuroImage 23, 1, September 2004, p. 111–
127,
http://www.inria.fr/sophia/asclepios/Publications/Gregoire.
Malandain/malandain-neuroimage-2004.pdf.
[RI-22] G. Malandain, G. Bertrand, N. Ayache,
“Topological segmentation of
discrete surfaces”,
International Journal of Computer Vision 10, 2,
Gregoire.Malandain/malandain-ijcv-1993.pdf.
[RI-23] G. Malandain, J.-D. Boissonnat, “Computing the Diameter of a Point Set”,
International Journal of Computational Geometry & Applications 12, 6, December 2002, p. 489–510, http://www.inria.fr/sophia/asclepios/Publications/
Gregoire.Malandain/malandain-ijcga-2002.pdf.
[RI-24] G. Malandain, S. Fernández-Vidal, “Euclidean Skeletons”, Image and Vision
Computing 16, 5, April 1998, p. 317–327.
[RI-25] O. Migneco, M. Benoit, P. Koulibaly, I. Dygai, C. Bertogliati, P. Desvignes,
P. Robert, G. Malandain, F. Bussière, J. Darcourt, “Perfusion brain SPECT and
Statistical Parametric Mapping analysis indicate that apathy is a cingulate syndrome: a study in Alzheimer’s disease and non-demented patients”, NeuroImage
13, 5, 2001, p. 896–902.
[RI-26] O. Monga, R. Deriche, G. Malandain, J.-P. Cocquerez, “Recursive filtering and
edge tracking: two primary tools for 3-D edge detection”, Image and Vision
Computing 9, 4, August 1991, p. 203–214.
[RI-27] J. Montagnat, M. Sermesant, H. Delingette, G. Malandain, N. Ayache, “Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images”, Pattern Recognition Letters 24, 4-5, February 2003, p. 815–828, Special Issue on Ultrasonic Image Processing and
Analysis,
http://www.inria.fr/sophia/asclepios/Publications/Maxime.
Sermesant/PRL2003Sermesant.pdf.
[RI-28] K. Murphy, B. van Ginneken, J. M. Reinhardt, S. Kabus, K. Ding, X. Deng,
K. Cao, K. Du, G. E. Christensen, V. Garcia, T. Vercauteren, N. Ayache,
O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova,
J. Sporring, M. de Bruijne, X. Han, M. P. Heinrich, J. A. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J. R. McClelland, S. Ourselin, S. E. Muenzing, M. A.
Viergever, D. D. Nigris, D. L. Collins, T. Arbel, M. Peroni, R. Li, G. C. Sharp,
A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song,
N. Tustison, B. Avants, J. C. Gee, M. Staring, S. Klein, B. C. Stoel, M. Urschler,
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M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut, J. P. Pluim, “Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge”,
IEEE Transactions on Medical Imaging, 2011.
[RI-29] R. Peeters, P. Kornprobst, M. Nikolova, S. Sunaert, T. Vieville, G. Malandain,
R. Deriche, O. Faugeras, M. Ng, P. Van Hecke, “The use of superresolution
techniques to reduce slice thickness in functional MRI”, International Journal of
Imaging Systems and Technology 14, 3, 2004, p. 131–138, Special issue on High
Resolution Image Reconstruction.
[RI-30] L. Picard, E. Maurincomme, M. Soderman, J. Feldmar, R. Anxionnat, L. Launay, K. Ericson, G. Malandain, S. Bracard, E. Kerrien, O. Flodmark, N. Ayache,
“X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology”, Stereotact Funct Neurosurg 68, 1-4 Pt 1, 1997,
p. 117–20.
[RI-31] A. Pitiot, E. Bardinet, P. M. Thompson, G. Malandain, “Piecewise Affine Registration of Biological Images for Volume Reconstruction”, Medical Image Analysis 10, 3, June 2006, p. 465–483, http://www.inria.fr/sophia/asclepios/
Publications/Gregoire.Malandain/MedIA-WBIR-pitiot-etal.pdf.
[RI-32] M. Reyes, G. Malandain, P. M. Koulibaly, M. A. Gonzalez-Ballester, J. Darcourt, “Model-based respiratory motion compensation for emission tomography image reconstruction”, Physics in Medicine and Biology 52, 12, June
Gregoire.Malandain/reyes-pmb-2007.pdf.
[RI-33] L. Robert, G. Malandain, “Fast Binary Image Processing Using Binary Decision
Diagrams”, Computer Vision and Image Understanding 72, 1, October 1998,
p. 1–9.
[RI-34] J.-M. Rocchisani, O. Monga, R. Deriche, G. Malandain, “Automatic multidimensional segmentation of nuclear medicine images using fast recursive filters”,
European Journal of Nuclear Medicine 16, 1990, p. 419.
[RI-35] A. Roche, G. Malandain, N. Ayache, “Unifying Maximum Likelihood Approaches
in Medical Image Registration”, International Journal of Imaging Systems and
Technology 11, 1, 2000, p. 71–80, Special Issue on 3D Imaging, http://www.
inria.fr/sophia/asclepios/Publications/Roche/ijist00.pdf.
[RI-36] A. Roche, X. Pennec, G. Malandain, N. Ayache, “Rigid Registration of 3D
Ultrasound with MR Images: a New Approach Combining Intensity and Gradient
Information”, IEEE Transactions on Medical Imaging 20, 10, October 2001,
p. 1038–1049, http://www.inria.fr/sophia/asclepios/Publications/Roche/
Roche_MR_US_TMI_2001.pdf.
[RI-37] A. W. Simonetti, V. A. Elezi, R. Farion, G. Malandain, C. Segebarth,
C. Remy, E. L. Barbier, “A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections”, Journal of Neuroscience Methods 158, 2, December 2006,
Malandain/simonetti-jnm-2006.pdf.
[RI-38] R. Sims, A. Isambert, V. Gregoire, F. Bidault, L. Fresco, J. Sage, J. Mills,
J. Bourhis, D. Lefkopoulos, O. Commowick, M. Benkebil, G. Malandain,
“A pre-clinical assessment of an atlas-based automatic segmentation tool
for the head and neck”,
Radiotherapy Oncology 93, 3, December 2009,
Malandain/sims-ro-2009.pdf.
[RI-39] L. Soler, H. Delingette, G. Malandain, N. Ayache, C. Koehl, J. M. Clement,
O. Dourthe, J. Marescaux, “An automatic virtual patient reconstruction from
CT-scans for hepatic surgical planning”, Stud Health Technol Inform 70, 2000,
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Malandain/soler-shti-2000.pdf.
[RI-40] L. Soler, H. Delingette, G. Malandain, J. Montagnat, N. Ayache, C. Koehl,
O. Dourthe, B. Malassagne, M. Smith, D. Mutter, J. Marescaux, “Fully automatic anatomical, pathological, and functional segmentation from CT scans for
hepatic surgery”, Comput Aided Surg 6, 3, 2001, p. 131–42, http://www.inria.
fr/sophia/asclepios/Publications/Herve.Delingette/cas2001_soler.pdf.
[RI-41] J. Thariat, L. Ramus, P. Maingon, G. Odin, V. Grégoire, V. Darcourt, P. Marcy,
N. Guevara, M. Orlanducci, S. Marcie, G. Poissonnet, A. Bozec, O. Dassonville,
F. Demard, L. Castillo, J. Santini, G. Malandain, “DENTALMAPS: Automatic
Dental Delineation for Radiotherapy Planning in Head and Neck Cancer”, Int J
Radiat Oncol Biol Phys, 2011, In press.
[RI-42] T. Vercauteren, A. Perchant, G. Malandain, X. Pennec, N. Ayache,
“Robust Mosaicing with Correction of Motion Distortions and
Tissue Deformation for In Vivo Fibered Microscopy”,
Medical Image Analysis 10, 5, October 2006, p. 673–692,
Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375,
http://www.inria.fr/sophia/asclepios/Publications/Tom.Vercauteren/
RobustMosaicingMotionDistoTissueDefInVivoFCM-MedIA06-Vercauteren.pdf.
[RI-43] J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, Jr.,
R. M. Kessler, R. J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes,
P. Suetens, D. Vandermeulen, P. A. van den Elsen, S. Napel, T. S. Sumanaweera,
B. Harkness, P. F. Hemler, D. L. G. Hill, D. J. Hawkes, C. Studholme, J. B. A.
Maintz, M. A. Viergever, G. Malandain, X. Pennec, M. E. Noz, G. Q. Maguire,
Jr., M. Pollack, C. A. Pelizzari, R. A. Robb, D. Hanson, R. P. Woods, “Comparison and evaluation of retrospective intermodality brain image registration
techniques”, Journal of Computer Assisted Tomography 21, 4, 1997, p. 554–566.
[RI-44] J. Yelnik, E. Bardinet, D. Dormont, G. Malandain, S. Ourselin, D. Tandé,
C. Karachi, N. Ayache, P. Cornu, Y. Agid, “A three-dimensional, histological
and deformable atlas of the human basal ganglia. I. Atlas construction based
on immunohistochemical and MRI data”, NeuroImage 34, 2, January 2007,
p. 618–38, http://www.inria.fr/sophia/asclepios/Publications/Bardinet/
bardinet-ni-2007.pdf.
National Journal Articles
[RN-1]
N. Ayache, O. Clatz, H. Delingette, G. Malandain, X. Pennec, M. Sermesant, “Vers un patient numérique personnalisé pour le diagnostic et la
thérapie guidés par l’image”, Médecine / Sciences 27, March 2011, p. 208–
213,
http://www.inria.fr/sophia/asclepios/Publications/Delingette/
Asclepios-Medecine-sciences2011.pdf.
[RN-2]
C. Bensa, C. Bertogliati, S. Chanalet, G. Malandain, P. Bedoucha, C. Lebrun,
“Early detection of cognitive impairment in relapsing-remitting multiple sclerosis: functional-anatomical correlations and longitudinal follow-up”, Revue Neurologique 162, 12, December 2006, p. 1221–31, [In French].
[RN-3]
P. Bondiau, G. Malandain, S. Chanalet, P. Marcy, C. Foa, N. Ayache,
“Traitement des images et radiothérapie”,
Cancer radiothérapie 8, 2,
Gregoire.Malandain/bondiau-cancer-2004.pdf.
[RN-4]
C. Lebrun, D. Rey, S. Chanalet, V. Bourg, C. Bensa, M. Chatel, N. Ayache,
G. Malandain, “The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions”, Revue Neurologique 160, 8-9, September 2004, p. 805–10, in French, http://www.inria.fr/
sophia/asclepios/Publications/Gregoire.Malandain/lebrun-rn-2004.pdf.
8
[RN-5]
G. Malandain, S. Fernández-Vidal, J.-M. Rocchisani, “Mise en correspondance
d’objets 3D par une approche mécanique : application aux images médicales
multimodales”, Traitement du signal 11, 6, 1994, p. 541–558.
[RN-6]
G. Malandain, M. Reyes, “La tomographie en mouvement”, Pour la science 338,
December 2005, p. 132–137.
[RN-7]
L. Ramus, J. Thariat, P.-Y. Marcy, Y. Pointreau, G. Bera, O. Commowick, G. Malandain, “Outils de contourage, utilisation et construction d’atlas
anatomiques : exemples des cancers de la tete et du cou”, Cancer radiothérapie
14, 3, 2010, p. 206–12, In French, http://www.inria.fr/sophia/asclepios/
Publications/Liliane.Ramus/cancerRadiotherapie10_lramus.pdf.
[RN-8]
L. Soler, G. Malandain, H. Delingette, “Segmentation automatique : application
aux angioscanners 3D du foie”, Traitement du signal 15, 5, 1998, p. 411–431.
[RN-9]
J.-C. Souplet, C. Lebrun, S. Chanalet, N. Ayache, G. Malandain, “Revue des approches de segmentation des lésions de sclérose en plaques dans
les séquences conventionnelles IRM”,
Revue Neurologique 165, 1, 2009,
p. 7–14, In french, http://www.inria.fr/sophia/asclepios/Publications/
Jean-Christophe.Souplet/souplet-rn-2009.pdf.
International Conference Articles (peer-reviewed)
[CI-1]
N. Ayache, J. Feldmar, G. Malandain, E. Maurincomme, C. Picard, Y. Trousset,
“Recalage sans cadre stéréotaxique d’images volumiques et projectives en radiologie interventionnelle”, in : Mini colloque INSERM de radiologie interventionnelle,
Paris, June 1995.
[CI-2]
N. Ayache, T. Vercauteren, G. Malandain, F. Oberrietter, N. Savoire, A. Perchant, “Processing and Mosaicing of Fibered Confocal Images”, in : MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB’06), October 2006. Invited, http://www.inria.fr/sophia/asclepios/
Publications/Ayache/ExAbstractMIIAB06-Ayache-light.pdf.
[CI-3]
E. Bardinet, D. Dormont, G. Malandain, M. Bhattacharjee, B. Pidoux, C. Saleh,
P. Cornu, N. Ayache, Y. Agid, J. Yelnik, “Retrospective cross-evaluation of an
histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation (DBS)”, in : Proceedings
of MICCAI’05, J. Duncan, G. Gerig (editors), LNCS, 3750, Springer, p. 385–
393, Palm Springs, California, 2005, http://www.inria.fr/sophia/asclepios/
Publications/Gregoire.Malandain/bardinet-miccai-2005.pdf.
[CI-4]
E. Bardinet, S. Fernández-Vidal, S. Damas, G. Malandain, N. P. de la
Blanca Capilla, “Structural Object Matching”, in : Advanced Concepts for Intelligent Vision Systems (ACIVS 2000), Baden-Baden, Allemagne, August 2000.
[CI-5]
E. Bardinet, S. Ourselin, D. Dormont, G. Malandain, D. Tandé, K. Parain,
N. Ayache, J. Yelnik, “Co-registration of histological, optical and MR data of
the human brain”, in : Medical Image Computing and Computer-Assisted Intervention (MICCAI’02), T. Dohi, R. Kikinis (editors), LNCS, 2488, Springer,
p. 548–555, Tokyo, September 2002, http://www.inria.fr/sophia/asclepios/
Publications/Bardinet/bardinet-siera-miccai-2002.pdf.
[CI-6]
E. Bardinet, S. Ourselin, G. Malandain, D. Tandé, K. Parain, N. Ayache, J. Yelnik, “Three dimensional functional cartography of the human
basal ganglia by registration of optical and histological serial sections”, in :
IEEE International Symposium on Biomedical Imaging, p. 329–332, Washington, USA, 2002, http://www.inria.fr/sophia/asclepios/Publications/
Bardinet/bardinet-isbi-2002.pdf.
9
[CI-7]
G. Bertrand, G. Malandain, “A new topological segmentation of discrete surfaces”, in : 2nd European Conference on Computer Vision (ECCV 92), p. 710–71,
May 18–23 1992. Santa Margherita, Ligure, Italy.
[CI-8]
C. Blondel, G. Malandain, R. Vaillant, N. Ayache, “4D deformation field of
coronary arteries from monoplane rotational X-ray angiography”, in : Computer
Assisted Radiology and Surgery 2003 Proceedings, ICS, 1256, Elsevier, Londres,
United Kingdom, June 2003.
[CI-9]
C. Blondel, G. Malandain, R. Vaillant, F. Devernay, E. Coste-Manière, N. Ayache,
“4D Tomographic Representation of Coronary Arteries From One Rotational Xray Sequence”, in : Medical image computing and computer-assisted intervention
(MICCAI 2003), R. E. Ellis, T. M. Peters (editors), LNCS, 2878, Springer, p. 416–
423, Montreal, Canada, November 2003.
[CI-10] C. Blondel, R. Vaillant, F. Devernay, G. Malandain, N. Ayache, “Automatic trinocular 3D reconstruction of coronary artery centerlines from rotational X-ray angiography”, in : Computer Assisted Radiology and Surgery 2002
Proceedings, Springer, p. 1073–1078, Paris, June 2002. International Symposium on Cardiovascular Imaging - Invasive Coronary and Vascular Imaging, http://www-sop.inria.fr/chir/personnel/Christophe.Blondel/CARS_
2002_Christophe_Blondel.pdf.
[CI-11] C. Blondel, R. Vaillant, G. Malandain, N. Ayache, “3D tomographic reconstruction of coronary arteries using a precomputed 4D motion field”, in : Proceedings
of the VIIth International Conference on Fully 3D Reconstruction In Radiology
and Nuclear Medicine, Y. Bizais (editor), Saint-Malo, France, July 2003.
[CI-12] J.-D. Boissonnat, R. Chaine, P. Frey, G. Malandain, F. Nicoud, S. Salmon,
E. Saltel, M. Thiriet, “From medical images to computational meshes”, in : Conference on Modelling and Simulation for Computer-aided Medicine and Surgery
(MS4CMS’02), M. Thiriet (editor), ESAIM: PROC, 12, European Series in Applied and Industrial Mathematics, p. 1–7, 2002.
[CI-13] P. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Pontvert,
J. Habrand, J. Bruneton, “Fusion Scanner / IRM entièrement automatique :
perspective d’utilisation pour la radiothérapie”, in : Proc. du XIX Forum de
Cancérologie, Paris, 31 mai- 2 juin 1999.
[CI-14] P.-Y. Bondiau, G. Malandain, N. Ayache, C. Zur, P. Chauvel, P. Gastaud, “L’oeil
virtuel”, in : 103ème Congrès de la société française d’ophtalmologie, Paris,
France, May 1997.
[CI-15] P.-Y. Bondiau, G. Malandain, P. Chauvel, F. Peyrade, J. Bruneton, “Automatic
eye reconstruction for radiotherapy”, in : 1st Joint Annual Conference of the
International Society for Computer Aided Surgery, Berlin, Germany, June 1997.
[CI-16] P.-Y. Bondiau, G. Malandain, P. Chauvel, “Projet de reconstruction tridimensionnelle de l’oeil à partir des images scanneurs, IRM et de fundographie. Utilisation pour la protonthérapie des tumeurs oculaires”, in : 35eme Congrès de la
société française des physiciens d’hôpital, Toulouse, France, 6-8 juin 1996.
[CI-17] P.-Y. Bondiau, G. Malandain, “Eye Reconstruction and CT-Retinography Fusion
for Proton Treatment Planning of Ocular Diseases”, in : CVRMed-MRCAS’97,
LNCS, 1205, Springer, p. 705–714, Grenoble, France, March 1997.
[CI-18] A. Charnoz, V. Agnus, G. Malandain, C. Forest, M. Tajine, L. Soler, “Liver
registration for the follow-up of hepatic tumors”, in : Proceedings of MICCAI’05,
J. Duncan, G. Gerig (editors), LNCS, 3750, Springer, p. 155–162, Palm Springs,
California, 2005.
10
[CI-19] A. Charnoz, V. Agnus, G. Malandain, L. Soler, M. Tajine, “Tree Matching Applied to Vascular System”, in : Graph-Based Representations in Pattern Recognition, L. Brun, M. Vento (editors), LNCS, 3434, Springer, p. 183–
192, 2005, http://www.inria.fr/sophia/asclepios/Publications/Gregoire.
Malandain/charnoz-gbr-2005.pdf.
[CI-20] A. Charnoz, V. Agnus, G. Malandain, L. Soler, M. Tajine, “Vascular system matching validated on the liver”, in : Proc. of Information Processing in Medical Imaging 2005 (IPMI’05), G. Christensen, M. Sonka (editors), LNCS, 3565, Springer, p. 443–455, Glenwood springs, Colorado, USA,
July 2005, http://www.inria.fr/sophia/asclepios/Publications/Gregoire.
Malandain/charnoz-ipmi-2005.pdf.
[CI-21] P. Chauvel, W. Sauerwein, N. Bornfeld, W. Friedrichs, N. Brassart, A. Courdi,
J. Hérault, J.-P. Pignol, P.-Y. Bondiau, G. Malandain, “Clinical and Technical
Requirements for Proton Treatment Planning of Ocular Diseases”, in : First
International Symposium on Special Aspects of Radiotherapy, Berlin (Germany),
May 3–6 1996.
[CI-22] O. Clatz, P. Y. Bondiau, H. Delingette, G. Malandain, M. Sermesant, S. Warfield,
N. Ayache, “In Silico Tumor Growth: Application to Glioblastomas”, in : Proc.
of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 (2), C. Barillot, D. Haynor, P. Hellier (editors), LNCS,
3217, Springer, p. 337–345, Saint-Malo, France, September 2004, http://www.
inria.fr/sophia/asclepios/Publications/Clatz/miccai_2004_clatz.pdf.
[CI-23] O. Commowick, V. Arsigny, J. Costa, N. Ayache, G. Malandain, “An Efficient
Locally Affine Framework for the Registration of Anatomical Structures”, in :
Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), p. 478–481, Crystal Gateway Marriott, Arlington, Virginia,
USA, April 2006, http://www.inria.fr/sophia/asclepios/Publications/
Commowick/CommowickIsbi2006.pdf.
[CI-24] O. Commowick, G. Malandain, “Evaluation of Atlas Construction Strategies in
the Context of Radiotherapy Planning”, in : Proceedings of the SA2PM Workshop (From Statistical Atlases to Personalized Models), Copenhagen, October
2006. held in conjunction with MICCAI 2006, http://www.inria.fr/sophia/
asclepios/Publications/Commowick/CommowickMiccai2006.pdf.
[CI-25] O. Commowick, G. Malandain, “Efficient Selection of the Most Similar Image
in a Database for Critical Structures Segmentation”, in : Proc. Medical Image
Computing and Computer Assisted Intervention (MICCAI’07), Part II, N. Ayache, S. Ourselin, A. Maeder (editors), LNCS, 4792, p. 203–210, Brisbane, Australia, October 2007, http://www.inria.fr/sophia/asclepios/Publications/
Olivier.Commowick/CommowickMiccai2007.pdf.
[CI-26] O. Commowick, R. Stefanescu, P. Fillard, V. Arsigny, N. Ayache, X. Pennec,
G. Malandain, “Incorporating Statistical Measures of Anatomical Variability
in Atlas-to-Subject Registration for Conformal Brain Radiotherapy”, in : Proceedings of the 8th Int. Conf. on Medical Image Computing and ComputerAssisted Intervention - MICCAI 2005, Part II, J. Duncan, G. Gerig (editors),
LNCS, 3750, Springer, p. 927–934, Palm Springs, CA, USA, October 2629, 2005, http://www.inria.fr/sophia/asclepios/Publications/Commowick/
CommowickMiccai05.pdf.
[CI-27] O. Commowick, S. K. Warfield, G. Malandain, “Using Frankenstein’s Creature Paradigm to Build a Patient Specific Atlas”,
in : Medical Image
Computing and Computer-Assisted Intervention (MICCAI’09), Part II, G.-Z.
Yang, D. Hawkes, D. Rueckert, A. Noble, C. Taylor (editors), Lecture Notes
in Computer Science, 5762, Springer, p. 993–1000, London, UK, September 2009, http://www.inria.fr/sophia/asclepios/Publications/Olivier.
Commowick/CommowickMiccai2009.pdf.
11
[CI-28] G. Dugas-Phocion, M. A. González Ballester, C. Lebrun, S. Chanalet, C. Bensa,
G. Malandain, N. Ayache, “Hierarchical Segmentation of Multiple Sclerosis Lesions in Multi-Sequence MRI”, in : International Symposium on Biomedical
Imaging: From Nano to Macro (ISBI’04), IEEE, Arlington, VA, USA, April
2004, http://www.inria.fr/sophia/asclepios/Publications/Dugas/Dugas_
ISBI_2004.pdf.
[CI-29] G. Dugas-Phocion, M. A. González Ballester, G. Malandain, C. Lebrun,
N. Ayache, “Improved EM-Based Tissue Segmentation and Partial Volume
Effect Quantification in Multi-Sequence Brain MRI”, in : Proc. of MICCAI’04, Lecture Notes in Computer Science, 3216, Springer, p. 26–33, SaintMalo, France, September 2004,
Publications/Dugas/Dugas_MICCAI_2004_final.pdf.
[CI-30] I. Dygai, J. Stoeckel, O. Migneco, P. Desvignes, G. Malandain, N. Ayache,
M. Chatel, F. Fauchon, M. Frenay, J. Darcourt, F. Bussière, “SPM Analysis
Applied to MIBI-SPECT for the Diagnosis of Recurrent Oligodendrogliomas”,
in : European Association of Nuclear Medicine Meeting, Paris, France, August
2000. European Journal of Nuclear Medecine 27(8):1144.
[CI-31] J. Feldmar, G. Malandain, N. Ayache, S. Fernández-Vidal, E. Maurincomme,
Y. Trousset, “Matching 3D MR Angiography Data and 2D X-ray Angiograms”,
in : CVRMed-MRCAS’97, LNCS, 1205, Springer, p. 129–138, Grenoble, France,
March 1997.
[CI-32] J. Feldmar, G. Malandain, J. Declerck, N. Ayache, “Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes”, in : Mathematical Methods in Biomedical Image Analysis, San Francisco, California, USA,
June 21-22 1996.
[CI-33] S. Fernández-Vidal, E. Bardinet, G. Malandain, S. Damas, N. de la
Blanca Capilla,
“Object Representation and Comparison Inferred from
Its Medial Axis”,
in :
International Conference on Pattern Recognition (ICPR 2000), 1, p. 1712–1715,
Barcelone, Espagne, septembre 2000, http://www.inria.fr/sophia/asclepios/Publications/Gregoire.
Malandain/fernandez-icpr-2000.pdf.
[CI-34] S. Fernández-Vidal, G. Malandain, “Digital Euclidean skeleton in n-D”, in :
9th Scandinavian Conference on Image Analysis (SCIA’95), IAPR, p. 517–524,
Uppsala, Sweden, June 1995.
[CI-35] S. Fernández-Vidal, G. Malandain,
“Squelettes euclidiens d’objets ndimensionnels”, in : 10ème Congrès Reconnaissance des Formes et Intelligence
Artificielle (RFIA’96), AFCET - AFIA, Rennes, France, 16-18 janvier 1996.
[CI-36] G. Flandin, F. Kherif, X. Pennec, G. Malandain, N. Ayache, J.-B. Poline,
“Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique”, in : Medical Image Computing and Computer-Assisted Intervention (MICCAI’02), T. Dohi, R. Kikinis (editors), LNCS, 2488, Springer,
p. 467–474, Tokyo, September 2002, http://www.inria.fr/sophia/asclepios/
Publications/Flandin/flandin-miccai-2002.pdf.
[CI-37] C. Fouard, G. Malandain, S. Prohaska, M. Westerhoff, F. Cassot, C. Mazel,
D. Asselot, J.-P. Marc-Vergnes, “Skeletonization by blocks for large datasets:
application to brain microcirculation”, in : International Symposium on Biomedical Imaging: From Nano to Macro (ISBI’04), IEEE, Arlington, VA, USA,
April 2004, http://www.inria.fr/sophia/asclepios/Publications/Fouard/
Fouard_et_al_ISBI_2004.pdf.
[CI-38] C. Fouard, G. Malandain, S. Prohaska, M. Westerhoff, F. Cassot, C. Mazel,
D. Asselot, J.-P. Marc-Vergnes, “Squelettisation par blocs pour des grands volumes de données 3D: application à la microcirculation cérébrale”, in : Proc. of
RFIA’04, Toulouse, France, 2004, http://www.inria.fr/sophia/asclepios/
Publications/Fouard/Fouard_et_al_RFIA_2004.pdf.
12
[CI-39] C. Fouard, G. Malandain, “Systematized calculation of optimal coefficients
of 3-D chamfer norms”, in : Proc. of DGCI’03, I. Nyström, G. S. di Baja,
S. Svensson (editors), LNCS, 2886, Springer, p. 214–223, Napoly, Italy, November 2003,
http://www.inria.fr/sophia/asclepios/Publications/Fouard/
Fouard_Malandain_DGCI_2003.pdf.
[CI-40] V. Garcia, O. Commowick, G. Malandain, “A Robust and Efficient Block Matching Framework for Non Linear Registration of Thoracic CT Images”, in : Grand
Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China,
September 2010,
http://www.inria.fr/sophia/asclepios/Publications/
Vincent.Garcia/Garcia_2010_EMPIRE10_2.pdf.
[CI-41] V. Garcia, T. Vercauteren, G. Malandain, N. Ayache,
“Diffeomorphic demons and the EMPIRE10 challenge”,
in : Grand Challenges in
Medical Image Analysis (MICCAI workshop),
Beijing, China, September 2010, http://www.inria.fr/sophia/asclepios/Publications/Vincent.
Garcia/Garcia_2010_EMPIRE10_1.pdf.
[CI-42] B. Gibaud, F. Ahmad, C. Barillot, F. Michel, B. Wali, B. Batrancourt, M. Dojat,
P. Girard, A. Gaignard, D. Lingrand, J. Montagnat, J. R. Balderrama, G. Malandain, X. Pennec, D. Godard, G. Kassel, M. Pélégrini-Issac, “A federated
system for sharing and reuse of images and image processing tools in neuroimaging”, in : Proc. of Computer Assisted Radiology and Surgery 2011 (CARS 2011),
June 2011.
[CI-43] M. Goris, G. Malandain, I. Marque, “Automatic registration of Myocardial Perfusion study using a Potential Based Rigid Transformation”, in : 2nd International
Conference of Nuclear Cardiology, Cannes France, April 1995. also in Journal of
Nuclear Cardiology 1995; 2: S82.
[CI-44] P. Hellier, C. Barillot, I. Corouge, B. Giraud, G. Le Goualher, L. Collins,
A. Evans, G. Malandain, N. Ayache, “Retrospective Evaluation of Inter-subject
Brain registration”, in : 4th Int. Conf. on Medical Image Computing and
Computer-Assisted Intervention (MICCAI’01), W. Niessen, M. Viergever (editors), LNCS, 2208, p. 258–265, Utrecht, The Netherlands, October 2001, http:
//www.inria.fr/sophia/asclepios/Publications/Hellier/22080258.pdf.
[CI-45] H. Hufnagel, X. Pennec, G. Malandain, H. Handels, N. Ayache, “Non-Linear 2D
and 3D Registration Using Block-Matching and B-Splines”, in : Bildverarbeitung
fuer die Medizin 2005, Informatik aktuell, Deutsches Krebsforschungszentrum,
Springer, p. 325–329, Heidelberg, Germany, March 2005, http://www.inria.
fr/sophia/asclepios/Publications/Heike.Hufnagel/huf_bvm05.pdf.
[CI-46] C. Kenwright, E. Bardinet, S. Hojjat, G. Malandain, N. Ayache, A. Colchester,
“2D to 3D Refinement of Post Mortem Optical and MRI Co-Registration”, in :
Medical image computing and computer-assisted intervention (MICCAI 2003),
R. E. Ellis, T. M. Peters (editors), LNCS, 2879, Springer, p. 935–944, Montreal,
Canada, November 2003.
[CI-47] K. Krissian, G. Malandain, N. Ayache, R. Vaillant, Y. Trousset, “Model-Based
Multiscale Detection of 3D Vessels”, in : Proc. of Worshop on Biomedical Image
Analysis WBIA’98, B. Vemuri (editor), p. 202–208, Santa Barbara, 1998.
[CI-48] K. Krissian, G. Malandain, N. Ayache, R. Vaillant, Y. Trousset, “Model-Based
Multiscale Detection of 3D Vessels”, in : Proc. of the IEEE Conf. on Computer
Vision and Pattern Recognition, CVPR’98, p. 722–727, Santa Barbara, 1998.
[CI-49] K. Krissian, G. Malandain, N. Ayache, “Directional Anisotropic Diffusion Applied to Segmentation of Vessels in 3D Images”, in : Scale-Space Theory in
Computer Vision (Scale-Space’97), LNCS, 1252, Springer, p. 345–348, Utrecht,
The Netherlands, July 1997.
13
[CI-50] G. Malandain, E. Bardinet, “Fusion of autoradiographies with an MR volume
using 2-D and 3-D linear transformations”, in : Proceedings of Information Processing in Medical Imaging (IPMI’03), C. Taylor, A. Noble (editors), LNCS, 2732,
Springer, p. 487–498, 2003.
[CI-51] G. Malandain, E. Bardinet, “Intensity compensation within series of images”, in :
Medical image computing and computer-assisted intervention (MICCAI 2003),
R. E. Ellis, T. M. Peters (editors), LNCS, 2879, Springer, p. 41–49, Montreal,
Canada, November 2003.
[CI-52] G. Malandain, G. Bertrand, N. Ayache, “Topological classification in digital
space”, in : XIIth international conference on Information Processing in Medical Imaging (IPMI), A. Colchester, D. Hawkes (editors), LNCS, 511, Springer,
p. 300–313, Wye, Kent, England, July 1991.
[CI-53] G. Malandain, G. Bertrand, N. Ayache, “Topological segmentation of discrete
surfaces”, in : Proceedings of the conference on Computer Vision and Pattern
Recognition, IEEE, p. 444–449, Lahaina, Maui, Hawaii, June 3–6 1991.
[CI-54] G. Malandain, G. Bertrand, “Fast characterization of 3D simple points”, in :
IAPR 11th International Conference on Pattern Recognition, The Hague, The
Netherlands, August 30 – September 3 1992.
[CI-55] G. Malandain, J.-D. Boissonnat, “Computing the Diameter of a Point Set”, in :
Discrete Geometry for Computer Imagery (DGCI 2002), A. Braquelaire, J.-O.
Lachaud, A. Vialard (editors), LNCS, 2301, Springer, Bordeaux, France, 2002.
also INRIA research report RR-4233, http://www.inria.fr/sophia/asclepios/
Publications/Gregoire.Malandain/dgci-2002.pdf.
[CI-56] G. Malandain, S. Fernández-Vidal, J.-M. Rocchisani, “Improving Registration
of 3-D Medical Images Using a Mechanical Based Method”, in : 3rd European
Conference on Computer Vision (ECCV’94), LNCS, 801, Springer, p. 131–136,
Stockholm, Sweden, May 2–6 1994.
[CI-57] G. Malandain, S. Fernández-Vidal, J.-M. Rocchisani, “Rigid Registration of 3D Objects by Motion Analysis”, in : 12th International Conference on Pattern
Recognition (ICPR’94), IAPR, p. 579–581, Jérusalem, Israël, October 9–13 1994.
[CI-58] G. Malandain, S. Fernández-Vidal, “Topologically correct skeleton in n − D”, in :
5th Discrete Geometry for Computer Imagery (DGCI’95), p. 199–208, ClermontFerrand, France, September 1995.
[CI-59] G. Malandain, J.-M. Rocchisani, “3D superimposition of CT and SPECT images
of the brain by a mechanical based method”, in : European Association of Nuclear
Medicine Congress, Lisbon, Portugal, August 1992. Also in European Journal of
Nuclear Medicine 19(8):624.
[CI-60] G. Malandain, J.-M. Rocchisani, “Registration of 3D medical images using a
mechanical based method”, in : IEEE EMBS satellite symposium on 3D advanced
image processing in medicine, Rennes, France, November 2–4 1992.
[CI-61] F. Michel, A. Gaignard, F. Ahmad, C. Barillot, B. Batrancourt, M. Dojat,
B. Gibaud, P. Girard, D. Godard, G. Kassel, D. Lingrand, G. Malandain, J. Montagnat, M. Pelegrini-Issac, X. Pennec, J. Rojas Balderrama, B. Wali, “Grid-wide
neuroimaging data federation in the context of the NeuroLOG project”, in : Proc.
of HealthGrid Conference, Studies in Health Technology and Informatics, 159,
p. 112–123, 2010, http://www.inria.fr/sophia/asclepios/Publications/
Xavier.Pennec/Michel_healthgrid10.pdf.
[CI-62] O. Migneco, M. Benoit, G. Malandain, J.-P. Thirion, P. Robert, N. Ayache,
F. Bussière, J. Darcourt, “SPECT memory activation thanks to non-rigid coregistration”, in : European Association of Nuclear Medecine Meeting, Glasgow,
Scotland, August 1997.
14
[CI-63] O. Migneco, J. Darcourt, M. Benoit, G. Malandain, J.-P. Thirion, P. Robert,
R. Vidal, P. Desvignes, J. Benoliel, N. Ayache, F. Bussière, “Activation mnésique
en TEMP”, in : 36eme Colloque de médecine nucléaire 1997, Rennes, France,
October 1997.
[CI-64] O. Migneco, G. Malandain, P. Koulibaly, P. Robert, N. Ayache, J. Darcourt,
“Evaluation of an automatic classifier for SPECT Alzheimer’s disease diagnosis”,
in : European Association of Nuclear Medicine Meeting, Napoli, Italy, 2001.
European Journal of Nuclear Medecine 28(8):1056.
[CI-65] O. Migneco, G. Malandain, A. Roche, I. Dygai, F. Bussière, N. Ayache, J. Darcourt, “Absolute calibration of HMPAO SPECT using Xenon-133”, in : European
Association of Nuclear Medicine Meeting, Paris, France, August 2000. European
Journal of Nuclear Medecine 27(8):967.
[CI-66] O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache,
J. Darcourt, “Une étude TEMP d’activation mnésique réalisée grâce à des recalages d’images 3D”, in : Actes du congrès sur la Méthodologie en imagerie
fonctionnelle cérébrale, Lyon, France, December 1996.
[CI-67] O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache,
J. Darcourt, “SPECT memory activation studies thanks to non-rigid automated
3D image registration”, in : CVRMed-MRCAS’97, LNCS, 1205, Springer, p. 487–
490, Grenoble, France, March 1997.
[CI-68] O. Monga, R. Deriche, G. Malandain, J. Cocquerez, “3-D edge detection by
recursive filtering and edge tracking”, in : 10th International Conference on
Pattern Recognition, Atlantic City, USA, June 17–21 1990.
[CI-69] O. Monga, R. Deriche, G. Malandain, J. Cocquerez, “Recursive filtering and edge
closing: two primary tools for 3-D edge detection”, in : 1st European Conference on Computer Vision (ECCV’90), Lecture Notes in Computer Science, 427,
Springer, Nice, France, April 1990.
[CI-70] J. Montagnat, H. Delingette, G. Malandain, “Cylindrical Echocardiographic
Images Segmentation based on 3D Deformable Models”, in : Medical Image Computing and Computer-Assisted Intervention (MICCAI’99), Lectures
Notes in Computer Science, 1679, Springer, p. 168–175, Cambridge, UK,
September 1999,
Herve.Delingette/miccai99.pdf.
[CI-71] F. Mourgues, F. Devernay, G. Malandain, E. Coste-Manière, “3D+t Modeling
of Coronary Artery Tree from Standard Non Simultaneous Angiograms”, in :
4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI’01), W. Niessen, M. Viergever (editors), LNCS, 2208, p. 1320–
1322, Utrecht, The Netherlands, October 2001, http://www.inria.fr/sophia/
asclepios/Publications/Mourgues/22081320.pdf.
[CI-72] S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache,
D. Tandé, K. Parain, J. Yelnik, “Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia”, in :
4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI’01), W. Niessen, M. Viergever (editors), LNCS, 2208, p. 743–
751, Utrecht, The Netherlands, October 2001, http://www.inria.fr/sophia/
asclepios/Publications/Ourselin/22080743.pdf.
[CI-73] A. Pitiot, G. Malandain, E. Bardinet, P. M. Thompson, “Piecewise Affine Registration of Biological Images”, in : Second International Workshop on Biomedical
Image Registration WBIR’03, J. Gee, J. A. Maintz, M. W. Vannier (editors),
Lecture Notes in Computer Science, 2717, Springer, p. 91–101, Philadelphia,
PA, USA, 2003. Also research report INRIA RR-4866, http://www.inria.fr/
sophia/asclepios/Publications/Pitiot/pitiot-wbir-2003.pdf.
15
[CI-74] L. Ramus, O. Commowick, G. Malandain, “Construction of Patient Specific
Atlases from Locally Most Similar Anatomical Pieces”, in : Medical Image Computing and Computer-Assisted Intervention (MICCAI’10), T. Jiang, N. Navab,
J. P. Pluim, M. A. Viergever (editors), Lecture Notes in Computer Science, 6363,
Springer, p. 155–162, Beijing, China, September 2010, http://www.inria.fr/
sophia/asclepios/Publications/Liliane.Ramus/miccai10_lramus.pdf.
[CI-75] L. Ramus, G. Malandain, “Using consensus measures for atlas construction”, in :
Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI’09), Boston, MA, July 2009, http://www.inria.fr/sophia/
asclepios/Publications/Liliane.Ramus/isbi09_lramus.pdf.
[CI-76] L. Ramus, G. Malandain, “Assessing Selection Methods in the Context of
Multi-atlas Based Segmentation”, in : Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI’10), IEEE, Rotterdam, The Netherlands, April 2010, http://www.inria.fr/sophia/asclepios/
Publications/Liliane.Ramus/isbi10_lramus.pdf.
[CI-77] L. Ramus, G. Malandain, “Multi-atlas based segmentation: Application to the
head and neck region for radiotherapy planning”, in : MICCAI Workshop Medical
Image Analysis for the Clinic - A Grand Challenge, Beijing, China, September 2010, http://www.inria.fr/sophia/asclepios/Publications/Liliane.
Ramus/miccai10_segmentationchallenge_lramus.pdf.
[CI-78] D. Rey, J. Stoeckel, G. Malandain, N. Ayache, “A Spatio-temporal Model-based
Statistical Approach to Detect Evolving Multiple Sclerosis Lesions”, in : IEEE
Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA’01,
Kauia, Hawai, USA, December 2001, http://www.inria.fr/sophia/asclepios/
Publications/Stoeckel/art1MMBIA.pdf.
[CI-79] D. Rey, J. Stoeckel, G. Malandain, N. Ayache, “Using SPM to Detect Evolving
MS Lesions”, in : 4th Int. Conf. on Medical Image Computing and ComputerAssisted Intervention (MICCAI’01), W. Niessen, M. Viergever (editors), LNCS,
2208, Springer, p. 1232–1234, Utrecht, The Netherlands, October 2001, http:
//www.inria.fr/sophia/asclepios/Publications/Rey/22081232.pdf.
[CI-80] M. Reyes, G. Malandain, J. Darcourt, P. M. Koulibaly, “Respiratory Motion Correction in Emission Tomography Imaging”, in : Fully Three-Dimensional Image
Reconstruction Meeting in Radiology and Nuclear Medicine, Salt Lake City, Utah,
USA, July 2005,
Reyes/mreyes-3DFull05.pdf.
[CI-81] M. Reyes, G. Malandain, P. M. Koulibaly, M. A. González Ballester, J. Darcourt, “Respiratory Motion Correction in Emission Tomography Image Reconstruction”, in : Proceedings of MICCAI’05, Part II, J. Duncan, G. Gerig (editors),
LNCS, 3750, Springer, p. 369–376, Palm Springs, California, 2005, http://www.
inria.fr/sophia/asclepios/Publications/Reyes/mreyes-miccai05.pdf.
[CI-82] L. Robert, G. Malandain, “Fast Binary Image Processing Using Binary Decision
Diagrams”, in : Computer Vision and Pattern Recognition, IEEE, p. 97–102,
Puerto Rico, June 1997.
[CI-83] A. Roche, G. Malandain, N. Ayache, S. Prima, “Towards a Better Comprehension of Similarity Measures used in Medical Image Registration”, in : Proc. of
2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI’99), C. Taylor, A. Colchester (editors), LNCS, 1679, Springer,
p. 555–566, Cambridge, UK, September 1999, http://www.inria.fr/sophia/
asclepios/Publications/Roche/miccai99.pdf.
[CI-84] A. Roche, G. Malandain, X. Pennec, N. Ayache, “The Correlation Ratio as a New
Similarity Measure for Multimodal Image Registration”, in : Proc. of First Int.
Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI’98), LNCS, 1496, Springer, p. 1115–1124, Cambridge, USA, October 1998,
http://www.inria.fr/sophia/asclepios/Publications/Roche/miccai98.pdf.
16
[CI-85] A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin,
L. M. Auer, N. Ayache, “Generalized Correlation Ratio for Rigid Registration
of 3D Ultrasound with MR Images”, in : Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI’00), A. DiGioia, S. Delp (editors), LNCS, 1935, p. 567–577, Pittsburgh, Pennsylvanie,
USA, October 11-14 2000. Published in IEEE TMI 20(10), oct. 2001, p. 25-31,
http://www.inria.fr/sophia/asclepios/Publications/Roche/miccai00.pdf.
[CI-86] N. Savoire, G. Le Goualher, A. Perchant, F. Lacombe, G. Malandain, N. Ayache,
“Measuring Blood Cells Velocity In Microvessels From a Single Image: Application To In Vivo and In Situ Confocal Microscopy”, in : Proc. ISBI’04, p. 456–
459, Arlington (USA), April 2004, http://www.inria.fr/sophia/asclepios/
Publications/Gregoire.Malandain/savoire-isbi-2004.pdf.
[CI-87] L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache,
O. Dourthe, J. Marescaux, “An Automatic Virtual Patient Reconstruction from
CT-Scans for Hepatic Surgical Planning”, in : Medicine Meets Virtual Reality
(MMVR’2000), Studies in Health Technology and Informatic, IOS press, Los
Angeles, January 2000.
[CI-88] L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache,
O. Dourthe, D. Mutter, J. Marescaux, “Planification Chirurgicale Hépatique
Assistée par Ordinateur”, in : Journées de la société française de Chirurgie
Digestive, Paris, December 1999.
[CI-89] L. Soler, H. Delingette, G. Malandain, J. Montagnat, N. Ayache, J.-M. Clément,
C. Koehl, O. Dourthe, D. Mutter, J. Marescaux, “A Fully Automatic Anatomical,
Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery”,
in : Medical Imaging 2000, SPIE proceedings, SPIE, p. 246–255, San Diego,
February 2000.
[CI-90] L. Soler, O. Dourthe, G. Malandain, J. Montagnat, H. Delingette, N. Ayache, “A
new 3D segmentation of liver neoplasm, portal venous system and parenchymal
contours”, in : European Congress of Radiology, Vienne (Autriche), mars 2000.
[CI-91] L. Soler, C. Koehl, H. Delingette, G. Malandain, N. Ayache, D. Mutter, J. Leroy,
B. Malassagne, J. Marescaux, “Planification Chirurgicale Hépatique Assistée par
Ordinateur”, in : 11ème Journées de printemps de l’ACHBT, Paris (France),
Juin 2000.
[CI-92] L. Soler, G. Malandain, H. Delingette, “Segmentation automatique : application aux angioscanners 3D du foie”, in : Proceedings of Sixth Orasis conference
(ORASIS’97), La Colle-sur-Loup, France, 1997, http://www.inria.fr/sophia/
asclepios/Publications/Herve.Delingette/orasis97.soler.pdf.
[CI-93] L. Soler, G. Malandain, J. Montagnat, H. Delingette, N. Ayache, J. Clément,
C. Roy, Y. Russier, V. Tassetti, J. Marescaux,
“Automatic Segmentation of Portal Vein in CT-Scans of the Liver”, in : Proceedings of World
Congress on Medical Physics and Biomedical Engineering, p. 788,
Nice,
France, 1997, http://www.inria.fr/sophia/asclepios/Publications/Herve.
Delingette/nice97.soler.pdf.
[CI-94] J.-C. Souplet, C. Lebrun, N. Ayache, G. Malandain, “An Automatic Segmentation of T2-FLAIR Multiple Sclerosis Lesions”, in : MICCAI-Multiple
Sclerosis Lesion Segmentation Challenge Workshop, New York, NY, USA,
September 2008,
Jean-Christophe.Souplet/souplet-MICCAIMSchallenge-2008.pdf.
[CI-95] J.-C. Souplet, C. Lebrun, N. Ayache, G. Malandain, “A New Evaluation
Of The Brain Parenchymal Fraction: Application In Multiple Sclerosis Longitudinal Studies”, in : Proceedings of the IEEE International Symposium on
Biomedical Imaging: From Nano to Macro (ISBI’08), IEEE, p. 65–68, Paris,
France, May 2008, http://www.inria.fr/sophia/asclepios/Publications/
Jean-Christophe.Souplet/souplet-ISBI-2008.pdf.
17
[CI-96] R. Stefanescu, O. Commowick, G. Malandain, P.-Y. Bondiau, N. Ayache,
X. Pennec, “Non-Rigid Atlas to Subject Registration with Pathologies for
Conformal Brain Radiotherapy”, in : Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004,
C. Barillot, D. Haynor, P. Hellier (editors), LNCS, 3216, Springer, p. 704–711,
Saint-Malo, France, September 2004, http://www.inria.fr/sophia/asclepios/
Publications/Stefanescu/MICCAI04_paper.pdf.
[CI-97] J. Stoeckel, N. Ayache, G. Malandain, P. M. Koulibaly, K. P. Ebmeier,
J. Darcourt, “Automatic Classification of SPECT Images of Alzheimer’s Disease Patients and Control Subjects”, in : Proc. of MICCAI’04, C. Barillot,
D. Haynor, P. Hellier (editors), LNCS, 3217, Springer, p. 654–662, SaintMalo, France, September 2004,
Publications/Stoeckel/stoeckel-miccai-2004.pdf.
[CI-98] J. Stoeckel, G. Malandain, O. Migneco, P. Koulibaly, P. Robert, N. Ayache,
J. Darcourt, “Classification of SPECT Images of Normal Subjects versus Images of Alzheimer’s Disease Patients”, in : 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI’01), W. Niessen,
M. Viergever (editors), LNCS, 2208, p. 666–674, Utrecht, The Netherlands, October 2001, http://www.inria.fr/sophia/asclepios/Publications/Stoeckel/
22080666.pdf.
[CI-99] J. Stoeckel, J.-B. Poline, G. Malandain, N. Ayache, J. Darcourt, “Smoothness
and degrees of freedom restrictions when using SPM 99”, in : Human Brain
Mapping HBM’01, Brighton, UK, June 2001. In NeuroImage 13(6 supplement
1):259.
[CI-100] M. Thiriet, G. Malandain, “Modélisation numérique de l’écoulement dans les
anévrismes cérébraux”, in : XXIIIème congrès de la société de Biomécanique,
Lyon, France, 17-18 septembre 1998.
[CI-101] M. Thiriet, S. Piperno, G. Malandain, P. Frey, J. Bittoun, A. Gaston, “Computational models of flow in cerebral aneurisms”, in : 11th Conference of the
European Society of Biomechanics, p. 20, Toulouse, France, 8-11 juillet 1998.
[CI-102] J. West, J. Fitzpatrick, M. Wang, B. Dawant, C. Maurer, Jr., R. Kessler, R. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P. van den Elsen, P. Hemler, S. Napel, T. Sumanaweera, B. Harkness,
D. Hill, C. Studholme, G. Malandain, X. Pennec, M. Noz, G. Maguire, Jr., M. Pollack, C. Pelizzari, R. Robb, D. Hanson, R. Woods, “Comparison and evaluation
of retrospective intermodality image registration techniques”, in : Medical Imaging 1996: Image Processing, SPIE proceedings series, 2710, Newport Beach,
California, USA, February 10-15 1996.
[CI-103] J. Yelnik, E. Bardinet, D. Dormont, C. François, D. Tandé, K. Parain, G. Malandain, N. Ayache, E. Hirsch, Y. Agid, “Delineation of the basal ganglia in
MR images of patients by automatic registration of a multimodal atlas based on
histological and MR data”, in : NeuroImage (HBM’03), New York, USA, 2003.
[CI-104] J. Yelnik, E. Bardinet, D. Dormont, C. François, D. Tandé, K. Parain, S. Ourselin,
G. Malandain, N. Ayache, E. Hirsch, “Elaboration of a three-dimensional, functional and registrable atlas of the human basal ganglia”, in : 3rd Forum of European Neuroscience, The Federation of European Neuroscience Societies (FENS),
Paris, July 2002.
Patents
[BR-1]
G. Malandain, L. Robert, “Dispositif de traitement de données d’acquisition,
notamment de données d’image”, FR9808087, 1998.
[BR-2]
D. Rey, G. Malandain, N. Ayache, J. Stoeckel, “Dispositif de méthode de traitement d’image pour détection de lèsions évolutives”, FR0113192,FR0115780, 2001.
18
[BR-3]
A. Roche, G. Malandain, N. Ayache, X. Pennec, “Dispositif électronique de
recalage automatique d’images”, French patent No FR 98 09649, Bulletin officiel
de la propriété intellectuelle no 00/39 du Sept. 09 2000. European extension No
99401881, September 2000.
[BR-4]
A. Roche, G. Malandain, N. Ayache, X. Pennec, “Electronic device for automatic
registration of images”, US patent No US 6,539,127 B1, Mars 25, 2003, March
2003.
[BR-5]
T. Vercauteren, A. Perchant, N. Ayache, X. Pennec, G. Malandain, “Robust
Mosaicing Method with Correction of Motion Distorsions and Tissue Deformations for In Vivo Fibered Microscopy”, US Patent Application 2009/0041314 (file
02.08.2007, published 12.02.2009), August 2007.
Research Reports
[RR-1]
E. Bardinet, G. Malandain, “Fusion of autoradiographies with an MR volume
using 2-D and 3-D linear transformations”, Research report number RR-4791,
INRIA, 2003, http://www.inria.fr/rrrt/rr-4791.html.
[RR-2]
G. Bertrand, G. Malandain, “A New Characterization of three-dimensional Simple Points”, Internal report, ESIEE, 1992.
[RR-3]
C. Blondel, G. Malandain, R. Vaillant, N. Ayache, “Reconstruction of Coronary Arteries from One Rotational X-Ray Projection Sequence”, Research report
number RR-5214, INRIA, May 2004, ftp://ftp.inria.fr/INRIA/publication/
publi-pdf/RR/RR-5214.pdf.
[RR-4]
O. Clatz, P.-Y. Bondiau, H. Delingette, M. Sermesant, S. Warfield, G. Malandain,
N. Ayache, “Brain Tumor Growth Simulation”, Research report number RR-5187,
INRIA, 2004, ftp://ftp-sop.inria.fr/pub/rapports/RR-5187.pdf.
[RR-5]
S. Fernández-Vidal, G. Malandain, “Squelettes euclidiens d’objets discrets ndimensionnels”, Research report number RR-2771, INRIA, 2004 route des Lucioles BP 93, 06902 Sophia Antipolis Cedex, France, janvier 1996, published in
Image and Vision Computing.
[RR-6]
C. Fouard, G. Malandain, S. Prohaska, M. Westerhoff, “Blockwise processing
applied to brain micro-vascular network study”, Research report number RR5581, INRIA, 2005, ftp://ftp.inria.fr/INRIA/publication/publi-pdf/RR/
RR-5581.pdf.
[RR-7]
C. Fouard, G. Malandain, “Automatic calculation of chamfer mask coefficients for
large masks and anisotropic images”, Research report number RR-4792, INRIA,
2003, ftp://ftp.inria.fr/INRIA/publication/publi-pdf/RR/RR-4792.pdf.
[RR-8]
P. Kornprobst, R. Peeters, T. Vieville, G. Malandain, S. Mierisova, S. Sunaert,
O. Faugeras, P. Van Hecke, “Superresolution in MRI and its influence in statistical
analysis”, Research report number RR-4513, INRIA, July 2002.
[RR-9]
K. Krissian, G. Malandain, N. Ayache, R. Vaillant, Y. Trousset, “Model Based
Detection of Tubular Structures in 3D Images”, Research report number RR-3736,
INRIA, July 1999.
[RR-10] K. Krissian, G. Malandain, N. Ayache, “Directional Anisotropic Diffusion applied
to segmentation of vessels in 3D images”, Research report number RR-3064, Inria
Sophia Antipolis, 2004 route des Lucioles BP 93 06902 Sophia Antipolis Cedex
(France), December 1996.
[RR-11] K. Krissian, G. Malandain, N. Ayache, “Model Based Multiscale Detection and
Reconstruction of 3D Vessels”, Research report number RR-3442, INRIA, March
1998.
19
[RR-12] G. Malandain, G. Bertrand, N. Ayache, “Segmentation topologique des surfaces
discretes”, Research report number RR-1357, INRIA, décembre 1990.
[RR-13] G. Malandain, J.-D. Boissonnat, “Computing the Diameter of a Point Set”,
Research report number RR-4233, INRIA, Sophia-Antipolis, July 2001.
[RR-14] G. Malandain, S. Fernández-Vidal, J.-M. Rocchisani, “Physically Based Rigid
Registration of 3-D Free-Form Objects: Application to Medical Imaging”, Research report number RR-2453, INRIA, January 1995.
[RR-15] G. Malandain, C. Fouard, “On optimal chamfer masks and coefficients”, Research report number RR-5566, INRIA, 2005, ftp://ftp.inria.fr/INRIA/
publication/publi-pdf/RR/RR-5566.pdf.
[RR-16] G. Malandain, J.-M. Rocchisani, “Matching of 3-D medical images with a potential based method”, Research report number RR-1890, INRIA, March 1993.
[RR-17] G. Malandain, “On topology in multidimensional discrete spaces”, Research
report number RR-2098, INRIA, 2004 route des Lucioles BP 93, 06902 Sophia
Antipolis Cedex, France, November 1993.
[RR-18] O. Monga, R. Deriche, G. Malandain, J. Cocquerez, “Recursive filtering and
edge closing : two primary tools for 3d edge detection”, Research report number
RR-1103, INRIA, October 1989.
[RR-19] S. Ourselin, X. Pennec, R. Stefanescu, G. Malandain, N. Ayache, “Robust Registration of Multi-Modal Medical Images: Towards Real-Time Clinical Applications”, Research report number RR-4333, INRIA, 2001.
[RR-20] A. Pitiot, E. Bardinet, P. M. Thompson, G. Malandain, “Automated Piecewise Affine Registration of Biological Images”, Research report number RR-4866,
INRIA, July 2003.
[RR-21] M. Reyes Aguirre, G. Malandain, J. Darcourt, “Respiratory Movement Correction in Emission Tomography”, Research report number RR-5279, INRIA, July
2004, ftp://ftp.inria.fr/INRIA/publication/publi-pdf/RR/RR-5279.pdf.
[RR-22] L. Robert, G. Malandain, “Fast Binary Image Processing Using Binary Decision
Diagrams”, Research report number RR-3001, INRIA, 2004 route des Lucioles
BP 93, 06902 Sophia Antipolis Cedex, France, octobre 1996.
[RR-23] A. Roche, G. Malandain, N. Ayache, “Unifying Maximum Likelihood Approaches
in Medical Image Registration”, Research report number RR-3741, INRIA, July
1999.
[RR-24] A. Roche, G. Malandain, X. Pennec, N. Ayache, “Multimodal Image Registration
by Maximization of the Correlation Ratio”, Research report number RR-3378,
INRIA, August 1998, Published in MICCAI’98, Cambridge, USA, LNCS 1496,
p. 1115-1124.
[RR-25] A. Roche, X. Pennec, G. Malandain, N. Ayache, S. Ourselin, “Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images”, Research
report number RR-3980, INRIA, July 2000, Published in IEEE TMI 20(10), oct.
2001, p. 25-31.
[RR-26] L. Soler, G. Malandain, H. Delingette, “Segmentation automatique des réseaux
vasculaires dans les images d’angiographie 3D”, Research report number RR-3496,
INRIA, 1998.
[RR-27] M.-L. Tabary, N. Ayache, J. Darcourt, G. Malandain, “Analyse statistique
d’images médicales : étude et utilisation du logiciel SPM”, Research report number RR-3802, INRIA, November 1999.
20
Miscellaneous
[AP-1]
N. Ayache, E. Bardinet, S. Benayoun, H. Delingette, G. Malandain, S. FernándezVidal, L. Soler, J. Montagnat, S. Cotin, G. Subsol, J.-P. Thirion, “Analysis of
medical images : Registration, Atlas, Motion”, Audiovisual material produced
by INRIA audiovisuel, 1996, http://www.inria.fr/multimedia/Videotheque/
0-Fiches-Videos/397-fra.html.
[AP-2]
K. Bénézery, F. Perret, P.-Y. Bondiau, G. Malandain, N. Ayache, “Recalage et
Fusion d’images Scanner et IRM du pelvis : utilisation dans le traitement du
cancer de la prostate”, 12ème Congrès de la Société Française de Radiothérapie
Oncologique (SFRO), Paris, 22-23 Novembre 2001.
[AP-3]
C. Bensa, S. Chanalet, G. Malandain, C. Bertogliati, P. Bedoucha, M. Mauro,
M. Chatel, C. Lebrun, “Sclérose en plaques et troubles cognitifs mineurs”,
Journées de Neurologie de Langue Française, April 2003, Revue Neurologique,
tome 159, page 2S63.
[AP-4]
C. Bensa, S. Chanalet, G. Malandain, C. Bertogliatti, P. Bedoucha, M. Magnié,
M. Chatel, C. Lebrun, “Multiple sclerosis and mild cognitive impairment”, 19th
Congress of the European Committee for Treatment and Research in Multiple
Sclerosis (ECTRIMS), September 2003, Multiple Sclerosis, P545, pp S136.
[AP-5]
C. Bensa, G. Malandain, S. Chanalet, C. Bertogliati, O. Migneco, M. Chatel,
C. Lebrun, “Multiple Sclerosis and Mild Cognitive Impairment”, American
Academy of Neurology, 56th Annual Meeting, April-May 2004.
[AP-6]
P. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Pontvert, J. L.
Habrand, J. N. Bruneton, “Full Automatic CT Scan and MRI Matching : Use
for Brain Tumor Radiotherapy”, Proc of RSNA’99, Chicago, 27 nov au 3 déc
1999, Supplement to Radiology 1999; 213, 236.
[AP-7]
P. Bondiau, G. Malandain, O. Commowick, P. Marcy, S. Chanalet, N. Ayache,
“Atlas-based Automatic Segmentation of MR Images: Validation Study on the
Brainstem in Radiotherapy Context”, 90th Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA), Chicago, 2004.
[AP-8]
P. Bondiau, O. Ostapiak, G. Malandain, T. Toubiana, K. Benezery, J. HannounLevi, R. Bensadoun, A. Courdi, D. Leschi, P. Chauvel, J. Gerard, “Fusion
de la tomographie par émission de positons (TEP) fonctionnelle et du Scanner
dosimétrique : Etude de faisabilité pour le traitement des tumeurs cérébrales”,
Proc. du premier atelier de radiothérapie assistée par l’image, Nice, 4 et 5 mai
2001.
[AP-9]
P.-Y. Bondiau, G. Malandain, P.-Y. Marcy, F. Peyrade, M. Frenay, J.-P. Gérard,
“Contourage automatique de l’encépahle utilisant la fusion d’image avec atlas
: résultats sur 3 patients”, 13ème Congrès National de la Société Française de
Radiothérapie Oncologique (SFRO), Bordeaux, November 2002.
[AP-10] P.-Y. Bondiau, J. Thariat, K. Bénézery, J. Hérault, C. Dalmasso, S. Marcié,
G. Malandain, “Doses aux organes à risque cérébraux : optimisation par radiothérapie stéréotaxique robotisée et atlas de segmentation automatique versus
radiothérapie conformationnelle tridimensionnelle”, 18e Congrès de la Société
Française de Radiothérapie Oncologique (SFRO), 2007, Cancer radiothérapie
11(6-7):399, 2007, http://www.inria.fr/sophia/asclepios/Publications/
Gregoire.Malandain/bondiau-sfro-2007.pdf.
[AP-11] M. Breuilly, G. Malandain, N. Ayache, P. Franken, J. Darcourt, T. Pourcher,
“Definition of motionless phases for monitoring gated reconstruction of
SPECT images in alive mice”,
ICVSS 2010,
Scicli, Sicilia, July
2010, http://www-sop.inria.fr/asclepios/Publications/Marine.Breuilly/
BreuillyICVSS2010.pdf.
21
[AP-12] Y. Chau, D. Rey, G. Malandain, C. Raffaelli, B. Padovani, “Extraction automatique des structures arborescentes pulmonaires, semi-automatique des segments
pulmonaires à partir de TDM thoraciques normales”, Journées Françaises de
Radiologie, JFR’2001, Paris, FRANCE, October 2001.
[AP-13] M. Cohen, C. Lebrun, D. Aufauvre, S. Chanalet, C. Filleau, W. Camu,
P. Thomas, G. Malandain, P. Clavelou, “Longitudinal MRI assessment of quality of life and disability in early treated relapsing remitting multiple sclerosis”,
American Academy of Neurology Annual Meeting, April 2010.
[AP-14] O. Commowick, P.-Y. Bondiau, G. Malandain, “Segmentation automatique des
tissus cérébraux en présence de structures pathologiques”, Proceedings of the
43th Journées Scientifiques de la Société Française de Physique Médicale (SFPM),
Montpellier, France, June 2004.
[AP-15] M. Dojat, M. Pélégrini-Issac, F. Ahmad, C. Barillot, B. Batrancourt, A. Gaignard, B. Gibaud, P. Girard, D. Godard, G. Kassel, D. Lingrand, G. Malandain,
F. Michel, J. Montagnat, X. Pennec, J. Balderrama, B. Wali, “NeuroLOG:
A framework for the sharing and reuse of distributed tools and data in neuroimaging”, 17th Annual Meeting of the Organization for Human Brain Mapping
(OHBM), June 26-30, Quebec, Canada, 2011, http://neurolog.i3s.unice.fr/
_media/public_namespace/hbm11-def.pdf.
[AP-16] G. Dugas-Phocion, M. A. G. Ballester, C. Lebrun, S. Chanalet, C. Bensa, M. Chatel, N. Ayache, G. Malandain, “Automatic segmentation of white matter lesions in
T2 FLAIR MRI of relapsing-remitting multiple sclerosis patients”, 20th Congress
of the European Committee for Treatment and Research in Multiple Sclerosis
(ECTRIMS), October 2004.
[AP-17] G. Dugas-Phocion, M. A. González Ballester, C. Lebrun, S. Chanalet, C. Bensa,
G. Malandain, “Segmentation automatique des hypersignaux de la substance
blanche (HSB) sur des IRM T2 FLAIR de patients atteints de forme rémittente
de sclérose en plaques”, Journées de Neurologie de Langue Française, April 2004.
[AP-18] G. Dugas-Phocion, C. Lebrun, S. Chanalet, M. Chatel, N. Ayache, G. Malandain, “Automatic segmentation of white matter lesions in multi-sequence
MRI of relapsing-remitting multiple sclerosis patients”, 21th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS),
September 2005.
[AP-19] A. Isambert, G. Bonniaud, R. Lery, R. Comtat, J.-C. Diaz, G. Malandain,
D. Lefkopoulos, “Evaluation sur fantôme d’un logiciel de recalage d’images multimodales automatique pour la radiothérapie”, 17e Congrès de la Société Française
de Radiothérapie Oncologique (SFRO), November 2006, Cancer radiothérapie
10(6-7):507, 2006.
[AP-20] A. Isambert, F. Dhermain, A. Beaudre, G. Malandain, O. Commowick, J. Diaz,
F. Bidault, P. Bondiau, J. Bourhis, M. Ricard, D. Lefkopoulos, “Requirements
for the use of an atlas-based automatic segmentation for delineation of Organs
at risk (OAR) in conformal radiotherapy (CRT): quality assurance (QA) and
preliminary results for 22 adult patients with primary brain tumors”, Acts
of the 24th European Society for Therapeutic Radiology and Oncology (ESTRO 2005), 2005, http://www.inria.fr/sophia/asclepios/Publications/
Gregoire.Malandain/isambert-estro-2005.pdf.
[AP-21] A. Isambert, F. Dhermain, F. Bidault, G. Bonniaud, R. Lery, G. Malandain,
O. Commowick, J.-C. Diaz, J. Bourhis, D. Lefkopoulos, “Evaluation of Multimodality Image Registration Software and Atlas-based Automatic Segmentation
for Delineation of Organs at Risk (OAR) in the Brain in Conformal Radiotherapy
(CRT)”, 48th Annual Meeting of the American Society for Therapeutic Radiology
and Oncology (ASTRO), Philadelphia, Pennsylvania, November 2006.
22
[AP-22] A. Isambert, F. Dhermain, G. Bonniaud, F. Bidault, A. Beaudre, G. Malandain,
O. Commowick, J.-C. Diaz, M. Ricard, J. Bourhis, D. Lefkopoulos, “Evaluation
d’un logiciel de recalage d’images multimodal et d’un outil de segmentation automatique des organes à risque (OAR) intra-crâniens en situation clinique d’une
radiothérapie conformationnelle 3D (RTC3D)”, Congrès annuel de la Société
Française des Physiciens Médicaux (SFPM), June 2006.
[AP-23] A. Isambert, V. Gregoire, F. Bidault, G. Calais, O. Commowick, G. Malandain,
J. Ruaud, M. Tomsej, C. Bramoulle, J. Bourhis, D. Lefkopoulos, “Atlas-based
automatic segmentation (ABAS) of head and neck (H&N) structures in conformal radiotherapy (CRT)”, Acts of the 26th European Society for Therapeutic
Radiology and Oncology (ESTRO), 2007.
[AP-24] C. Lebrun, C. Bensa, G. Malandain, C. Bertogliati, O. Migneco, M.-N. Magnie,
“Sclérose en plaque et troubles cognitifs mineurs”, Journées de Neurologie de
Langue Française, April 2004.
[AP-25] C. Lebrun, S. Chanalet, J.-C. Souplet, N. Ayache, G. Malandain, “Imaging
pre-treatment tools and automatic segmentation of lesion burden”, Journées
Internationales de la Société Française de Neurologie, June 2007.
[AP-26] C. Lebrun, D. Rey, S. Chanalet, N. Ayache, M. Chatel, G. Malandain, “First
validation experiments of a 3-D automatic algorithm based on a vector field analysis to detect and quantify volume variation of multiple sclerosis lesions”, 19th
Congress of the European Committee for Treatment and Research in Multiple
Sclerosis (ECTRIMS), September 2003, Multiple Sclerosis, P455, pp S112.
[AP-27] C. Lebrun, D. Rey, S. Chanalet, V. Bourg, M. Chatel, N. Ayache, G. Malandain,
“Intérêt du recalage automatique des IRM cérébrales dans le suivi et la décision
thérapeutique : application à la sclérose en plaques”, 10èmes Journées JeanDenis-Degos Thérapeutique et Neurologie, December 2003.
[AP-28] C. Lebrun-Frenay, D. Rey, G. Malandain, S. Chanalet, N. Ayache, M. Chatel,
“Detection and quantification of MS lesions MRI variations by mathematical
differential operators”, 16th Congress of the European Committee for Treatment
and Research in Multiple Sclerosis, septembre 6-9 2000, Revue Neurologique
(Supplement), 156(3S104).
[AP-29] S. Novellas, G. Malandain, J. Costa, J.-C. Souplet, N. Ayache, P. Chevallier,
“Apport d’un algorithme de segmentation semi-automatique pour analyse des
adénopathies médiastinales”, Journées Françaises de Radiologie, October 2008.
[AP-30] E. Pernod, J.-C. Souplet, M. Cohen, N. Toussaint, C. Lebrun, G. Malandain,
“SepINRIA v1.7.2: Multiple Sclerosis Brain MRI visualisation, comparison and
analysis Software”, World Congress for Treatment and Research in Multiple
Sclerosis (WCTRIMS), September 2008.
[AP-31] L. Ramus, S. Aouadi, Y. Pointreau, G. Bera, Y. Tao, A. Beaudré, V. Grégoire,
G. Malandain, “Design and use of patient-specific atlases for radiotherapy planning of the head and neck region”, Acts of the 29th European Society for Therapeutic Radiology and Oncology (ESTRO), 96, 2010, http://www.inria.fr/
sophia/asclepios/Publications/Liliane.Ramus/estro10_lramus.pdf.
[AP-32] D. Rey, C. Lebrun-Frenay, G. Malandain, S. Chanalet, N. Ayache, M. Chatel,
“A New Method to Detect and Quantify Evolving MS Lesions by Mathematical
Operators”, American Academy of Neurology, 52nd Annual Meeting, May 2000,
Neurology (Supplement 3) 54(7):123.
[AP-33] M. A. Reyes, G. Malandain, N. Ayache, J. Darcourt, P. M. Koulibaly, “Respiratory Motion Compensation within Emission Tomographic Reconstruction”, 52nd
Annual Meeting of the Society of Nuclear Medicine, Toronto, Canada, June 2005.
23
[AP-34] L. Soler, G. Malandain, H. Delingette, J. Montagnat, “Computerized anatomical segmentation of the liver from helical CT-Scanners”, ERCIM News No.31,
October 1997.
[AP-35] J.-C. Souplet, P. Fillard, N. Toussaint, C. Lebrun, G. Malandain, “SepINRIA: A
software to analyse Multiple Sclerosis Brain MRI”, 60th American Academy of
Neurology Annual Meeting, April 2008.
[AP-36] J.-C. Souplet, C. Lebrun, P. Clavelou, W. Camu, S. Chanalet, N. Ayache, G. Malandain,
“A comparative study of skull stripping methods in relapsing-remitting multiple sclerosis: Emergence of a new automatic segmentation algorithm”,
Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS),
October 2007,
Jean-Christophe.Souplet/Souplet_2007_ECTRIMS_Skullstripping.pdf.
[AP-37] J.-C. Souplet, C. Lebrun, P. Clavelou, W. Camu, S. Chanalet, N. Ayache, G. Malandain, “A Comparative Study of Atrophy Measurements in Multiple Sclerosis”,
17th Franco-UK scientific meeting of ARSEP (François Lhermitte Conferences),
Paris, France, March 2008.
[AP-38] J.-C. Souplet, C. Lebrun, P. Clavelou, W. Camu, S. Chanalet, N. Ayache, G. Malandain, “A New Atrophy Measurement Method dedicated to Multiple Sclerosis”,
60th American Academy of Neurology Annual Meeting, Chicago, USA, April
2008.
[AP-39] J.-C. Souplet, C. Lebrun, P. Fillard, N. Ayache, P. Clavelou, G. Malandain,
“SepINRIA : un outil d’évaluation de la charge lésionnelle chez des patients atteints de sclérose en plaques”, Journées Internationales de la SFN : Sclérose en
Plaques (Multiple Sclerosis), June 2007, Abstract in Revue Neurologique (Paris)
2007; 163: 6-7, 725, http://www.inria.fr/sophia/asclepios/Publications/
Jean-Christophe.Souplet/Souplet_2007_SFN_SepINRIA.pdf.
[AP-40] J.-C. Souplet, C. Lebrun, G. Malandain, “SepINRIA: Un logiciel gratuit dédié
à l’analyse d’Images de Résonance Magnétique cérébrales de patients atteints de
sclérose en Plaques”, Journées de Neurologie de Langue Française, Nice, France,
April 2008.
[AP-41] J.-C. Souplet, C. Lebrun, G. Malandain, “SepINRIA v1.7.1: A Free Software
for Lesion Segmentation and Atrophy Evaluation dedicated to Multiple Sclerosis
Brain MRI”, Journal of Neurology - 18th European Neurological Society Meeting,
Springer, Nice, France, 255, June 2008.
[AP-42] J. Thariat, L. Ramus, P. Maingon, V. Grégoire, V. Darcourt, S. Marcie, G. Malandain, “Atlas de contourage automatique des dents pour l’optimisation des soins
dentaires”, 21e Congrès de la Société Française de Radiothérapie Oncologique
(SFRO),
2010,
Liliane.Ramus/sfro10_jthariat.pdf.
[AP-43] J. Thariat, L. Ramus, P. Maingon, V. Grégoire, S. Marcie, G. Malandain,
“Construction of a dental atlas for automatic teeth segmentation to improve post-irradiation dental care management”,
52nd Annual
Meeting of the American Society for Therapeutic Radiology and Oncology
(ASTRO), 2010, http://www.inria.fr/sophia/asclepios/Publications/
Liliane.Ramus/astro10_jthariat.pdf.
24

Resume / CV - Sophia Antipolis - Méditerranée

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Fabrice Michel Objective : Research/Software Engineer